| Symbol | Description |
| AATF | Apoptosis antagonizing transcription factor |
| ADNP | Activity-dependent neuroprotector homeobox |
| ADNP2 | ADNP homeobox 2 |
| AEBP1 | AE binding protein 1 |
| AFF1 | AF4/FMR2 family, member 1 |
| AFF4 | AF4/FMR2 family, member 4 |
| AHR | Aryl hydrocarbon receptor |
| AIRE | Autoimmune regulator |
| ALS2CR8 | Amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 8 |
| ALX3 | Aristaless-like homeobox 3 |
| ALX4 | Aristaless-like homeobox 4 |
| ANKRD30A | Ankyrin repeat domain 30A |
| AR | Androgen receptor (dihydrotestosterone receptor; testicular feminization; spinal and bulbar muscular atrophy; Kennedy disease) |
| ARID3A | AT rich interactive domain 3A (BRIGHT-like) |
| ARID4A | AT rich interactive domain 4A (RBP1-like) |
| ARNT | Aryl hydrocarbon receptor nuclear translocator |
| ARNT2 | Aryl-hydrocarbon receptor nuclear translocator 2 |
| ARNTL | Aryl hydrocarbon receptor nuclear translocator-like |
| ARNTL2 | Aryl hydrocarbon receptor nuclear translocator-like 2 |
| ARX | Aristaless related homeobox |
| ASCL1 | Achaete-scute complex homolog 1 (Drosophila) |
| ASCL2 | Achaete-scute complex homolog 2 (Drosophila) |
| ATBF1 | AT-binding transcription factor 1 |
| ATF1 | Activating transcription factor 1 |
| ATF2 | Activating transcription factor 2 |
| ATF3 | Activating transcription factor 3 |
| ATF4 | Activating transcription factor 4 (tax-responsive enhancer element B67) |
| ATF5 | Activating transcription factor 5 |
| ATF6 | Activating transcription factor 6 |
| ATF7 | Activating transcription factor 7 |
| ATOH1 | Atonal homolog 1 (Drosophila) |
| ATRX | Alpha thalassemia/mental retardation syndrome X-linked (RAD54 homolog, S. cerevisiae) |
| BACH1 | BTB and CNC homology 1, basic leucine zipper transcription factor 1 |
| BACH2 | BTB and CNC homology 1, basic leucine zipper transcription factor 2 |
| BAPX1 | Bagpipe homeobox homolog 1 (Drosophila) |
| BARHL1 | BarH-like homeobox 1 |
| BARHL2 | BarH-like homeobox 2 |
| BARX1 | BARX homeobox 1 |
| BARX2 | BARX homeobox 2 |
| BATF | Basic leucine zipper transcription factor, ATF-like |
| BATF2 | Basic leucine zipper transcription factor, ATF-like 2 |
| BAZ1B | Bromodomain adjacent to zinc finger domain, 1B |
| BCL6 | B-cell CLL/lymphoma 6 (zinc finger protein 51) |
| BHLHB2 | Basic helix-loop-helix domain containing, class B, 2 |
| BHLHB3 | Basic helix-loop-helix domain containing, class B, 3 |
| BLZF1 | Basic leucine zipper nuclear factor 1 (JEM-1) |
| BNC1 | Basonuclin 1 |
| BRD8 | Bromodomain containing 8 |
| BRF1 | BRF1 homolog, subunit of RNA polymerase III transcription initiation factor IIIB (S. cerevisiae) |
| BTAF1 | BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae) |
| BTF3L1 | Basic transcription factor 3, like 1 |
| BTG2 | BTG family, member 2 |
| BUD31 | BUD31 homolog (S. cerevisiae) |
| C21orf66 | Chromosome 21 open reading frame 66 |
| C21orf7 | Chromosome 21 open reading frame 7 |
| C2orf3 | Chromosome 2 open reading frame 3 |
| C3orf31 | Chromosome 3 open reading frame 31 |
| C9orf152 | Chromosome 9 open reading frame 152 |
| CART1 | Cartilage paired-class homeoprotein 1 |
| CBFA2T2 | Core-binding factor, runt domain, alpha subunit 2; translocated to, 2 |
| CBFA2T3 | Core-binding factor, runt domain, alpha subunit 2; translocated to, 3 |
| CBFB | Core-binding factor, beta subunit |
| CBL | Cas-Br-M (murine) ecotropic retroviral transforming sequence |
| CCDC88B | Coiled-coil domain containing 88B |
| CCRN4L | CCR4 carbon catabolite repression 4-like (S. cerevisiae) |
| CDX1 | Caudal type homeobox 1 |
| CDX2 | Caudal type homeobox 2 |
| CDX4 | Caudal type homeobox 4 |
| CEBPA | CCAAT/enhancer binding protein (C/EBP), alpha |
| CEBPB | CCAAT/enhancer binding protein (C/EBP), beta |
| CEBPD | CCAAT/enhancer binding protein (C/EBP), delta |
| CEBPE | CCAAT/enhancer binding protein (C/EBP), epsilon |
| CEBPG | CCAAT/enhancer binding protein (C/EBP), gamma |
| CHX10 | Ceh-10 homeodomain containing homolog (C. elegans) |
| CIR | CBF1 interacting corepressor |
| CITED1 | Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 1 |
| CITED2 | Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 |
| CLOCK | Clock homolog (mouse) |
| CNBP | CCHC-type zinc finger, nucleic acid binding protein |
| CNOT7 | CCR4-NOT transcription complex, subunit 7 |
| CNOT8 | CCR4-NOT transcription complex, subunit 8 |
| CREB1 | CAMP responsive element binding protein 1 |
| CREB3 | CAMP responsive element binding protein 3 |
| CREB3L1 | CAMP responsive element binding protein 3-like 1 |
| CREB3L2 | CAMP responsive element binding protein 3-like 2 |
| CREB3L3 | CAMP responsive element binding protein 3-like 3 |
| CREB3L4 | CAMP responsive element binding protein 3-like 4 |
| CREB5 | CAMP responsive element binding protein 5 |
| CREBBP | CREB binding protein (Rubinstein-Taybi syndrome) |
| CREBL1 | CAMP responsive element binding protein-like 1 |
| CREBL2 | CAMP responsive element binding protein-like 2 |
| CREBZF | CREB/ATF bZIP transcription factor |
| CREM | CAMP responsive element modulator |
| CRX | Cone-rod homeobox |
| CSDA | Cold shock domain protein A |
| CTCF | CCCTC-binding factor (zinc finger protein) |
| CTNNB1 | Catenin (cadherin-associated protein), beta 1, 88kDa |
| CUTL1 | Cut-like 1, CCAAT displacement protein (Drosophila) |
| CUTL2 | Cut-like 2 (Drosophila) |
| DBP | D site of albumin promoter (albumin D-box) binding protein |
| DBX2 | Developing brain homeobox 2 |
| DDIT3 | DNA-damage-inducible transcript 3 |
| DLX1 | Distal-less homeobox 1 |
| DLX2 | Distal-less homeobox 2 |
| DLX3 | Distal-less homeobox 3 |
| DLX4 | Distal-less homeobox 4 |
| DLX5 | Distal-less homeobox 5 |
| DLX6 | Distal-less homeobox 6 |
| DMBX1 | Diencephalon/mesencephalon homeobox 1 |
| DMRT1 | Doublesex and mab-3 related transcription factor 1 |
| DMRT2 | Doublesex and mab-3 related transcription factor 2 |
| DMRT3 | Doublesex and mab-3 related transcription factor 3 |
| DMRTA1 | DMRT-like family A1 |
| DMRTA2 | DMRT-like family A2 |
| DMRTB1 | DMRT-like family B with proline-rich C-terminal, 1 |
| DMRTC2 | DMRT-like family C2 |
| DMTF1 | Cyclin D binding myb-like transcription factor 1 |
| DRAP1 | DR1-associated protein 1 (negative cofactor 2 alpha) |
| DUX1 | Double homeobox, 1 |
| DUX4 | Double homeobox, 4 |
| E2F1 | E2F transcription factor 1 |
| E2F2 | E2F transcription factor 2 |
| E2F3 | E2F transcription factor 3 |
| E2F4 | E2F transcription factor 4, p107/p130-binding |
| E2F5 | E2F transcription factor 5, p130-binding |
| E2F6 | E2F transcription factor 6 |
| E2F8 | E2F transcription factor 8 |
| E4F1 | E4F transcription factor 1 |
| EDF1 | Endothelial differentiation-related factor 1 |
| EGR1 | Early growth response 1 |
| EGR2 | Early growth response 2 (Krox-20 homolog, Drosophila) |
| EGR3 | Early growth response 3 |
| EGR4 | Early growth response 4 |
| EHF | Ets homologous factor |
| ELF1 | E74-like factor 1 (ets domain transcription factor) |
| ELF2 | E74-like factor 2 (ets domain transcription factor) |
| ELF3 | E74-like factor 3 (ets domain transcription factor, epithelial-specific ) |
| ELF4 | E74-like factor 4 (ets domain transcription factor) |
| ELF5 | E74-like factor 5 (ets domain transcription factor) |
| ELK1 | ELK1, member of ETS oncogene family |
| ELK3 | ELK3, ETS-domain protein (SRF accessory protein 2) |
| ELK4 | ELK4, ETS-domain protein (SRF accessory protein 1) |
| EMX1 | Empty spiracles homeobox 1 |
| EMX2 | Empty spiracles homeobox 2 |
| EN1 | Engrailed homeobox 1 |
| EN2 | Engrailed homeobox 2 |
| ENO1 | Enolase 1, (alpha) |
| EOMES | Eomesodermin homolog (Xenopus laevis) |
| EP300 | E1A binding protein p300 |
| EPAS1 | Endothelial PAS domain protein 1 |
| ERF | Ets2 repressor factor |
| ERG | V-ets erythroblastosis virus E26 oncogene homolog (avian) |
| ESR1 | Estrogen receptor 1 |
| ESR2 | Estrogen receptor 2 (ER beta) |
| ESRRA | Estrogen-related receptor alpha |
| ESRRB | Estrogen-related receptor beta |
| ESRRG | Estrogen-related receptor gamma |
| ESX1 | ESX homeobox 1 |
| ETS1 | V-ets erythroblastosis virus E26 oncogene homolog 1 (avian) |
| ETS2 | V-ets erythroblastosis virus E26 oncogene homolog 2 (avian) |
| ETV1 | Ets variant gene 1 |
| ETV2 | Ets variant gene 2 |
| ETV3 | Ets variant gene 3 |
| ETV4 | Ets variant gene 4 (E1A enhancer binding protein, E1AF) |
| ETV5 | Ets variant gene 5 (ets-related molecule) |
| ETV6 | Ets variant gene 6 (TEL oncogene) |
| ETV7 | Ets variant gene 7 (TEL2 oncogene) |
| EVI1 | Ecotropic viral integration site 1 |
| EVX1 | Even-skipped homeobox 1 |
| EVX2 | Even-skipped homeobox 2 |
| EWSR1 | Ewing sarcoma breakpoint region 1 |
| FEV | FEV (ETS oncogene family) |
| FKHL18 | Forkhead-like 18 (Drosophila) |
| FLI1 | Friend leukemia virus integration 1 |
| FLJ16478 | FLJ16478 protein |
| FLJ38773 | Hypothetical protein FLJ38773 |
| FLJ40712 | FLJ40712 protein |
| FLJ46838 | FLJ46838 protein |
| FMNL2 | Formin-like 2 |
| FOS | V-fos FBJ murine osteosarcoma viral oncogene homolog |
| FOSB | FBJ murine osteosarcoma viral oncogene homolog B |
| FOSL1 | FOS-like antigen 1 |
| FOSL2 | FOS-like antigen 2 |
| FOXA1 | Forkhead box A1 |
| FOXA2 | Forkhead box A2 |
| FOXA3 | Forkhead box A3 |
| FOXB1 | Forkhead box B1 |
| FOXB2 | Forkhead box B2 |
| FOXC1 | Forkhead box C1 |
| FOXC2 | Forkhead box C2 (MFH-1, mesenchyme forkhead 1) |
| FOXD1 | Forkhead box D1 |
| FOXD2 | Forkhead box D2 |
| FOXD3 | Forkhead box D3 |
| FOXD4 | Forkhead box D4 |
| FOXD4L1 | Forkhead box D4-like 1 |
| FOXD4L3 | Forkhead box D4-like 3 |
| FOXD4L4 | Forkhead box D4-like 4 |
| FOXD4L6 | Forkhead box D4-like 6 |
| FOXE1 | Forkhead box E1 (thyroid transcription factor 2) |
| FOXE3 | Forkhead box E3 |
| FOXF1 | Forkhead box F1 |
| FOXF2 | Forkhead box F2 |
| FOXG1 | Forkhead box G1 |
| FOXH1 | Forkhead box H1 |
| FOXI1 | Forkhead box I1 |
| FOXJ1 | Forkhead box J1 |
| FOXJ2 | Forkhead box J2 |
| FOXJ3 | Forkhead box J3 |
| FOXK1 | Forkhead box K1 |
| FOXK2 | Forkhead box K2 |
| FOXL1 | Forkhead box L1 |
| FOXL2 | Forkhead box L2 |
| FOXM1 | Forkhead box M1 |
| FOXN1 | Forkhead box N1 |
| FOXN2 | Forkhead box N2 |
| FOXN3 | Forkhead box N3 |
| FOXN4 | Forkhead box N4 |
| FOXO1 | Forkhead box O1 |
| FOXO3 | Forkhead box O3 |
| FOXO4 | Forkhead box O4 |
| FOXP1 | Forkhead box P1 |
| FOXP2 | Forkhead box P2 |
| FOXP3 | Forkhead box P3 |
| FOXP4 | Forkhead box P4 |
| FOXQ1 | Forkhead box Q1 |
| FOXR1 | Forkhead box R1 |
| FOXR2 | Forkhead box R2 |
| FUBP1 | Far upstream element (FUSE) binding protein 1 |
| GABPA | GA binding protein transcription factor, alpha subunit 60kDa |
| GABPB2 | GA binding protein transcription factor, beta subunit 2 |
| GAS7 | Growth arrest-specific 7 |
| GATA1 | GATA binding protein 1 (globin transcription factor 1) |
| GATA2 | GATA binding protein 2 |
| GATA3 | GATA binding protein 3 |
| GATA4 | GATA binding protein 4 |
| GATA5 | GATA binding protein 5 |
| GATA6 | GATA binding protein 6 |
| GATAD1 | GATA zinc finger domain containing 1 |
| GATAD2A | GATA zinc finger domain containing 2A |
| GATAD2B | GATA zinc finger domain containing 2B |
| GBX2 | Gastrulation brain homeobox 2 |
| GCM1 | Glial cells missing homolog 1 (Drosophila) |
| GLI2 | GLI-Kruppel family member GLI2 |
| GLI3 | GLI-Kruppel family member GLI3 (Greig cephalopolysyndactyly syndrome) |
| GLYCTK | Glycerate kinase |
| GSC | Goosecoid homeobox |
| GSCL | Goosecoid-like |
| GSH1 | GS homeobox 1 |
| GSH2 | GS homeobox 2 |
| GTF2A2 | General transcription factor IIA, 2, 12kDa |
| GTF2B | General transcription factor IIB |
| GTF2H2 | General transcription factor IIH, polypeptide 2, 44kDa |
| GTF2H3 | General transcription factor IIH, polypeptide 3, 34kDa |
| GTF2H4 | General transcription factor IIH, polypeptide 4, 52kDa |
| GTF2I | General transcription factor II, i |
| GTF2IRD1 | GTF2I repeat domain containing 1 |
| HAND1 | Heart and neural crest derivatives expressed 1 |
| HAND2 | Heart and neural crest derivatives expressed 2 |
| HCFC1 | Host cell factor C1 (VP16-accessory protein) |
| HCLS1 | Hematopoietic cell-specific Lyn substrate 1 |
| HDAC1 | Histone deacetylase 1 |
| HDAC2 | Histone deacetylase 2 |
| HDX | Highly divergent homeobox |
| HES6 | Hairy and enhancer of split 6 (Drosophila) |
| HESX1 | HESX homeobox 1 |
| HEY1 | Hairy/enhancer-of-split related with YRPW motif 1 |
| HEY2 | Hairy/enhancer-of-split related with YRPW motif 2 |
| HEYL | Hairy/enhancer-of-split related with YRPW motif-like |
| HHEX | Hematopoietically expressed homeobox |
| HIC1 | Hypermethylated in cancer 1 |
| HIF1A | Hypoxia-inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) |
| HIF3A | Hypoxia inducible factor 3, alpha subunit |
| HIP2 | Huntingtin interacting protein 2 |
| HIRA | HIR histone cell cycle regulation defective homolog A (S. cerevisiae) |
| HIVEP3 | Human immunodeficiency virus type I enhancer binding protein 3 |
| HLF | Hepatic leukemia factor |
| HLX1 | H2.0-like homeobox 1 |
| HLXB9 | Homeobox HB9 |
| HMBOX1 | Homeobox containing 1 |
| HMG20A | High-mobility group 20A |
| HMG20B | High-mobility group 20B |
| HMGA1 | High mobility group AT-hook 1 |
| HMGB2 | High-mobility group box 2 |
| HMX1 | H6 family homeobox 1 |
| HMX2 | H6 family homeobox 2 |
| HNF4A | Hepatocyte nuclear factor 4, alpha |
| HNF4G | Hepatocyte nuclear factor 4, gamma |
| HNRPAB | Heterogeneous nuclear ribonucleoprotein A/B |
| HOMEZ | Homeobox and leucine zipper encoding |
| HOP | Homeodomain-only protein |
| HOXA1 | Homeobox A1 |
| HOXA10 | Homeobox A10 |
| HOXA11 | Homeobox A11 |
| HOXA13 | Homeobox A13 |
| HOXA2 | Homeobox A2 |
| HOXA3 | Homeobox A3 |
| HOXA4 | Homeobox A4 |
| HOXA5 | Homeobox A5 |
| HOXA6 | Homeobox A6 |
| HOXA7 | Homeobox A7 |
| HOXA9 | Homeobox A9 |
| HOXB1 | Homeobox B1 |
| HOXB13 | Homeobox B13 |
| HOXB2 | Homeobox B2 |
| HOXB3 | Homeobox B3 |
| HOXB4 | Homeobox B4 |
| HOXB5 | Homeobox B5 |
| HOXB6 | Homeobox B6 |
| HOXB7 | Homeobox B7 |
| HOXB8 | Homeobox B8 |
| HOXB9 | Homeobox B9 |
| HOXC10 | Homeobox C10 |
| HOXC11 | Homeobox C11 |
| HOXC12 | Homeobox C12 |
| HOXC13 | Homeobox C13 |
| HOXC6 | Homeobox C6 |
| HOXC8 | Homeobox C8 |
| HOXC9 | Homeobox C9 |
| HOXD1 | Homeobox D1 |
| HOXD10 | Homeobox D10 |
| HOXD11 | Homeobox D11 |
| HOXD12 | Homeobox D12 |
| HOXD13 | Homeobox D13 |
| HOXD3 | Homeobox D3 |
| HOXD4 | Homeobox D4 |
| HOXD8 | Homeobox D8 |
| HOXD9 | Homeobox D9 |
| HR | Hairless homolog (mouse) |
| HSAJ2425 | P65 protein |
| HSF1 | Heat shock transcription factor 1 |
| HSF2 | Heat shock transcription factor 2 |
| HSF4 | Heat shock transcription factor 4 |
| HSF5 | Heat shock transcription factor family member 5 |
| HSFX1 | Heat shock transcription factor family, X linked 1 |
| HSFY1 | Heat shock transcription factor, Y-linked 1 |
| HSFY2 | Heat shock transcription factor, Y linked 2 |
| IKZF3 | IKAROS family zinc finger 3 (Aiolos) |
| IKZF4 | IKAROS family zinc finger 4 (Eos) |
| IRF1 | Interferon regulatory factor 1 |
| IRF2 | Interferon regulatory factor 2 |
| IRF3 | Interferon regulatory factor 3 |
| IRF4 | Interferon regulatory factor 4 |
| IRF5 | Interferon regulatory factor 5 |
| IRF6 | Interferon regulatory factor 6 |
| IRF7 | Interferon regulatory factor 7 |
| IRF8 | Interferon regulatory factor 8 |
| IRX1 | Iroquois homeobox 1 |
| IRX2 | Iroquois homeobox 2 |
| IRX3 | Iroquois homeobox 3 |
| IRX4 | Iroquois homeobox 4 |
| IRX5 | Iroquois homeobox 5 |
| IRX6 | Iroquois homeobox 6 |
| ISGF3G | Interferon-stimulated transcription factor 3, gamma 48kDa |
| ISL1 | ISL LIM homeobox 1 |
| ISL2 | ISL LIM homeobox 2 |
| ISX | Intestine-specific homeobox |
| JARID1A | Jumonji, AT rich interactive domain 1A |
| JDP2 | Jun dimerization protein 2 |
| JUN | Jun oncogene |
| JUNB | Jun B proto-oncogene |
| JUND | Jun D proto-oncogene |
| KIAA1618 | KIAA1618 |
| KLF1 | Kruppel-like factor 1 (erythroid) |
| KLF10 | Kruppel-like factor 10 |
| KLF11 | Kruppel-like factor 11 |
| KLF12 | Kruppel-like factor 12 |
| KLF15 | Kruppel-like factor 15 |
| KLF16 | Kruppel-like factor 16 |
| KLF2 | Kruppel-like factor 2 (lung) |
| KLF3 | Kruppel-like factor 3 (basic) |
| KLF4 | Kruppel-like factor 4 (gut) |
| KLF5 | Kruppel-like factor 5 (intestinal) |
| KLF7 | Kruppel-like factor 7 (ubiquitous) |
| KLF9 | Kruppel-like factor 9 |
| KNTC1 | Kinetochore associated 1 |
| KRTAP5-1 | Keratin associated protein 5-1 |
| L3MBTL4 | L(3)mbt-like 4 (Drosophila) |
| LASS2 | LAG1 homolog, ceramide synthase 2 |
| LASS3 | LAG1 homolog, ceramide synthase 3 |
| LASS4 | LAG1 homolog, ceramide synthase 4 |
| LASS5 | LAG1 homolog, ceramide synthase 5 |
| LASS6 | LAG1 homolog, ceramide synthase 6 |
| LBX1 | Ladybird homeobox 1 |
| LBX2 | Ladybird homeobox 2 |
| LHX1 | LIM homeobox 1 |
| LHX2 | LIM homeobox 2 |
| LHX3 | LIM homeobox 3 |
| LHX4 | LIM homeobox 4 |
| LHX5 | LIM homeobox 5 |
| LHX6 | LIM homeobox 6 |
| LHX8 | LIM homeobox 8 |
| LHX9 | LIM homeobox 9 |
| LHX9 | LIM homeobox 9 |
| LMO1 | LIM domain only 1 (rhombotin 1) |
| LMO4 | LIM domain only 4 |
| LMX1A | LIM homeobox transcription factor 1, alpha |
| LMX1B | LIM homeobox transcription factor 1, beta |
| LOC360030 | Homeobox C14 |
| LZTR1 | Leucine-zipper-like transcription regulator 1 |
| LZTS1 | Leucine zipper, putative tumor suppressor 1 |
| MAF | V-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian) |
| MAFA | V-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian) |
| MAFB | V-maf musculoaponeurotic fibrosarcoma oncogene homolog B (avian) |
| MAFF | V-maf musculoaponeurotic fibrosarcoma oncogene homolog F (avian) |
| MAFG | V-maf musculoaponeurotic fibrosarcoma oncogene homolog G (avian) |
| MAFK | V-maf musculoaponeurotic fibrosarcoma oncogene homolog K (avian) |
| MAML3 | Mastermind-like 3 (Drosophila) |
| MAX | MYC associated factor X |
| MBD1 | Methyl-CpG binding domain protein 1 |
| MDS1 | Myelodysplasia syndrome 1 |
| MEF2A | Myocyte enhancer factor 2A |
| MEF2B | Myocyte enhancer factor 2B |
| MEF2C | Myocyte enhancer factor 2C |
| MEF2D | Myocyte enhancer factor 2D |
| MEIS1 | Meis homeobox 1 |
| MEIS2 | Meis homeobox 2 |
| MEIS3 | Meis homeobox 3 |
| MEIS3P1 | Meis homeobox 3 pseudogene 1 |
| MEOX1 | Mesenchyme homeobox 1 |
| MEOX2 | Mesenchyme homeobox 2 |
| MGA | MAX gene associated |
| MIXL1 | Mix1 homeobox-like 1 (Xenopus laevis) |
| MKX | Mohawk homeobox |
| MLL | Myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila) |
| MLL4 | Myeloid/lymphoid or mixed-lineage leukemia 4 |
| MLLT10 | Myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 |
| MLX | MAX-like protein X |
| MNT | MAX binding protein |
| MORF4 | Mortality factor 4 |
| MPND | MPN domain containing |
| MSC | Musculin (activated B-cell factor-1) |
| MSL3L1 | Male-specific lethal 3-like 1 (Drosophila) |
| MSRB2 | Methionine sulfoxide reductase B2 |
| MSX1 | Msh homeobox 1 |
| MSX2 | Msh homeobox 2 |
| MTA1 | Metastasis associated 1 |
| MTA2 | Metastasis associated 1 family, member 2 |
| MTA3 | Metastasis associated 1 family, member 3 |
| MTF1 | Metal-regulatory transcription factor 1 |
| MXD1 | MAX dimerization protein 1 |
| MYBL2 | V-myb myeloblastosis viral oncogene homolog (avian)-like 2 |
| MYC | V-myc myelocytomatosis viral oncogene homolog (avian) |
| MYCL1 | V-myc myelocytomatosis viral oncogene homolog 1, lung carcinoma derived (avian) |
| MYCN | V-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian) |
| MYEF2 | Myelin expression factor 2 |
| MYF5 | Myogenic factor 5 |
| MYF6 | Myogenic factor 6 (herculin) |
| MYNN | Myoneurin |
| MYOD1 | Myogenic differentiation 1 |
| MYOG | Myogenin (myogenic factor 4) |
| MYST2 | MYST histone acetyltransferase 2 |
| MYT1 | Myelin transcription factor 1 |
| MYT1L | Myelin transcription factor 1-like |
| MYT2 | Myelin transcription factor 2 |
| MZF1 | Myeloid zinc finger 1 |
| NANOG | Nanog homeobox |
| NANOGP8 | Nanog homeobox pseudogene 8 |
| NEUROD2 | Neurogenic differentiation 2 |
| NEUROG1 | Neurogenin 1 |
| NEUROG3 | Neurogenin 3 |
| NFAT5 | Nuclear factor of activated T-cells 5, tonicity-responsive |
| NFATC1 | Nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1 |
| NFATC2 | Nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 |
| NFATC3 | Nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3 |
| NFATC4 | Nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4 |
| NFE2 | Nuclear factor (erythroid-derived 2), 45kDa |
| NFE2L1 | Nuclear factor (erythroid-derived 2)-like 1 |
| NFE2L2 | Nuclear factor (erythroid-derived 2)-like 2 |
| NFE2L3 | Nuclear factor (erythroid-derived 2)-like 3 |
| NFIA | Nuclear factor I/A |
| NFIB | Nuclear factor I/B |
| NFIC | Nuclear factor I/C (CCAAT-binding transcription factor) |
| NFIL3 | Nuclear factor, interleukin 3 regulated |
| NFIX | Nuclear factor I/X (CCAAT-binding transcription factor) |
| NFKB1 | Nuclear factor of kappa light polypeptide gene enhancer in B-cells 1 (p105) |
| NFKB2 | Nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100) |
| NFX1 | Nuclear transcription factor, X-box binding 1 |
| NFXL1 | Nuclear transcription factor, X-box binding-like 1 |
| NFYA | Nuclear transcription factor Y, alpha |
| NFYB | Nuclear transcription factor Y, beta |
| NFYC | Nuclear transcription factor Y, gamma |
| NKX1-1 | NK1 homeobox 1 |
| NKX2-2 | NK2 homeobox 2 |
| NKX2-3 | NK2 transcription factor related, locus 3 (Drosophila) |
| NKX2-5 | NK2 transcription factor related, locus 5 (Drosophila) |
| NKX2-8 | NK2 homeobox 8 |
| NKX3-1 | NK3 homeobox 1 |
| NKX6-1 | NK6 homeobox 1 |
|