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Gene Search
Antigen Profiler
BLAST
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Single letter AA sequence:
Score:
Advanced Peptide Design
Nucleotide
Peptide
(enter accession number or fasta sequence)
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ALL Mammalian
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Homo sapiens
Mus Musculus
Rat
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Danio rerio
Drosophila (All) (rel.1)
Fugu rubripes (All) (rel.1)
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Xenopus laevis
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RNAi
|
Validated GIPZ shRNAmir cancer
|
Data Table
KEY
ND
1
No data - 18S but not target gene detected likely indicating low gene expression.
ND
2
No data - High Ct value for 18S indicating there was too little sample mRNA.
ND
3
No data - Reaction failed for other reasons.
1
1 tissue culture replicates
2
2 tissue culture replicates
3/4
3 or 4 tissue culture replicates
Data Table
Gene list with corresponding clone ID# and percent remaining gene expression.
Gene
Oligo ID
OVCAR-8
MCF-7
%
Replicates
%
Replicates
ABL1
V2LHS_198745
14%
2
65%
2
V2LHS_196508
40%
2
126%
2
V2LHS_196809
115%
2
88%
1
ABL2
V2LHS_201802
10%
2
113%
1
V2LHS_49239
21%
1
34%
2
V2LHS_203486
24%
2
104%
2
AKT1
V2LHS_287019
15%
4
49%
2
V2LHS_188525
21%
4
67%
4
V2LHS_192049
45%
2
147%
4
AKT3
V2LHS_68871
11%
4
ND
1,2
0
V2LHS_68869
19%
4
147%
2
V2LHS_68872
102%
4
114%
2
ANXA8
V2LHS_132531
9%
2
16%
2
V2LHS_132529
18%
2
48%
1
V2LHS_287020
38%
2
27%
2
APAF1
V2LHS_94539
10%
2
50%
2
V2LHS_94542
23%
2
134%
3
V2LHS_94543
45%
2
113%
2
ATM
V2LHS_192880
20%
2
74%
1
V2LHS_89368
42%
2
100%
2
V2LHS_89366
47%
2
ND
1,2
0
ATR
V2LHS_94659
24%
4
86%
4
V2LHS_94661
29%
2
44%
2
V2LHS_287021
116%
4
87%
6
AXL
V2LHS_202535
14%
2
ND
2,3
0
V2LHS_132889
77%
2
ND
2,3
0
V2LHS_201787
91%
2
ND
2,3
0
BCL2
V2LHS_111810
31%
2
38%
2
V2LHS_111806
40%
2
89%
3
V2LHS_111811
79%
1
113%
2
BCL2L1
V2LHS_202373
27%
2
54%
1
V2LHS_287022
31%
2
71%
1
V2LHS_269487
33%
2
62%
2
BCL3
V2LHS_48622
26%
4
50%
2
V2LHS_48623
29%
4
66%
4
V2LHS_48625
69%
4
89%
4
BCL9
V2LHS_287023
21%
4
41%
2
V2LHS_15242
37%
4
82%
4
V2LHS_287024
40%
2
111%
4
BLK
V2LHS_150029
ND
1
0
ND
1
0
V2LHS_262371
ND
1
0
ND
1
0
V2LHS_150031
ND
1
0
ND
1
0
BRCA1
V2LHS_90880
26%
2
47%
2
V2LHS_90876
36%
2
71%
2
V2LHS_90877
39%
2
69%
2
BUB1
V2LHS_15109
9%
2
58%
2
V2LHS_15112
11%
2
34%
2
V2LHS_15111
26%
2
79%
2
BUB1B
V2LHS_112634
45%
2
12%
2
V2LHS_112635
75%
4
15%
4
V2LHS_112633
78%
4
101%
4
CAPZB
V2LHS_62217
6%
2
21%
2
V2LHS_280836
10%
2
28%
2
V2LHS_287028
20%
2
81%
2
CCNA2
V2LHS_112771
22%
2
86%
2
V2LHS_112774
23%
2
43%
2
V2LHS_112775
26%
1
133%
1
CCNE1
V2LHS_112781
20%
4
38%
4
V2LHS_112782
37%
4
78%
4
V2LHS_112780
41%
4
45%
2
CCNE2
V2LHS_202834
17%
1
39%
2
V2LHS_202479
20%
1
34%
2
V2LHS_203157
62%
1
45%
2
CDC2
V2LHS_150417
21%
2
41%
2
V2LHS_150421
28%
2
59%
2
V2LHS_150418
40%
2
46%
2
CDH1
V2LHS_14837
33%
2
82%
2
V2LHS_243170
52%
2
31%
2
V2LHS_14838
71%
2
17%
2
CDK2
V2LHS_150476
12%
2
18%
2
V2LHS_150479
21%
2
11%
2
V2LHS_150477
24%
2
54%
2
CDKN1A
V2LHS_202469
31%
2
61%
2
V2LHS_203118
38%
2
64%
2
V2LHS_268120
44%
2
70%
2
CDKN1C
V2LHS_88832
10%
1
70%
2
V2LHS_257806
17%
1
26%
2
V2LHS_88831
ND
1
0
39%
2
CDKN2A
V2LHS_200168
51%
2
ND
1
0
V2LHS_200698
81%
2
ND
1
0
V2LHS_195839
125%
2
ND
1
0
CDKN2B
V2LHS_262142
18%
2
26%
2
V2LHS_202466
23%
2
31%
2
V2LHS_201553
81%
2
83%
2
CDKN2C
V2LHS_262296
10%
4
18%
2
V2LHS_262058
37%
2
78%
2
V2LHS_202787
75%
4
124%
2
COL4A6
V2LHS_150724
31%
4
102%
4
V2LHS_150727
37%
2
30%
2
V2LHS_150723
127%
4
202%
4
CSK
V2LHS_287029
15%
2
40%
2
V2LHS_24205
18%
2
38%
2
V2LHS_24207
19%
2
26%
2
CSNK1E
V2LHS_150981
16%
4
38%
4
V2LHS_150981
38%
4
62%
4
V2LHS_192204
83%
4
105%
4
CTGF
V2LHS_151005
46%
4
101%
6
V2LHS_151004
80%
4
118%
6
V2LHS_151007
72%
4
156%
6
CTNNB1
V2LHS_151023
8%
2
16%
2
V2LHS_151022
31%
2
58%
2
V2LHS_151027
77%
2
69%
2
CXCR4
V2LHS_172392
33%
4
332%
3
V2LHS_172391
23%
2
68%
3
V2LHS_172388
84%
4
75%
3
DAPK1
V2LHS_62089
12%
4
22%
2
V2LHS_62084
24%
4
32%
2
V2LHS_62085
42%
4
125%
2
DDR1
V2LHS_202770
10%
4
28%
4
V2LHS_262746
18%
4
21%
4
V2LHS_263364
42%
2
65%
4
DDR2
V2LHS_63697
15%
4
25%
4
V2LHS_63700
15%
4
22%
4
V2LHS_63695
41%
4
20%
2
DEK
V2LHS_172419
4%
2
8%
2
V2LHS_172420
14%
2
7%
2
V2LHS_172423
102%
2
72%
2
DNMT3B
V2LHS_77234
48%
2
70%
4
V2LHS_77230
71%
4
67%
4
V2LHS_77233
48%
2
67%
4
DYRK2
V2LHS_32605
34%
1
63%
2
V2LHS_32603
36%
1
91%
4
V2LHS_32604
38%
1
96%
3
E2F1
V2LHS_43497
20%
2
14%
2
V2LHS_43498
30%
4
39%
3
V2LHS_287030
63%
2
59%
2
EDG2
V2LHS_239027
21%
2
ND
1
0
V2LHS_239021
26%
2
ND
1
0
V2LHS_201631
72%
2
ND
1
0
EED
V2LHS_23171
48%
2
48%
2
V2LHS_23172
82%
3
93%
4
V2LHS_23174
123%
4
93%
4
EPHA2
V2LHS_17961
14%
2
7%
3
V2LHS_17959
31%
4
77%
3
EPHA4
V2LHS_17861
52%
1
132%
3
V2LHS_17864
ND
1
0
118%
2
V2LHS_101745
ND
1
0
76%
2
EPHB3
V2LHS_17765
75%
4
85%
4
V2LHS_17766
75%
3
65%
2
V2LHS_17694
80%
2
98%
2
EPHB4
V2LHS_17706
17%
2
84%
2
V2LHS_17702
84%
4
80%
2
V2LHS_17701
100%
2
99%
2
ERBB2
V2LHS_17669
97%
4
73%
4
V2LHS_17671
108%
4
21%
2
V2LHS_17672
124%
4
40%
2
ERBB4
V2LHS_43330
ND
1,2
0
83%
2
V2LHS_43326
ND
1,2
0
43%
2
V2LHS_43327
ND
1,2
0
348%
2
ETS1
V2LHS_244839
38%
2
ND
1
0
V2LHS_262605
94%
2
ND
1
0
V2LHS_43294
110%
2
ND
1
0
EZH2
V2LHS_17508
ND
1
0
52%
2
V2LHS_63066
ND
1
0
27%
2
V2LHS_238994
ND
1
0
32%
2
FADD
V2LHS_16972
11%
1
61%
2
V2LHS_16975
14%
1
21%
2
V2LHS_16973
ND
1
0
45%
2
FER
V2LHS_43109
9%
3
28%
4
V2LHS_43108
24%
4
38%
2
V2LHS_43110
12%
2
38%
2
FES
V2LHS_113826
19%
2
26%
3
V2LHS_113824
27%
4
47%
2
V2LHS_113821
35%
3
28%
4
FGFR1
V2LHS_194182
91%
2
84%
2
V2LHS_193464
108%
2
98%
2
V2LHS_191146
110%
2
99%
2
FGFR2
V2LHS_201766
ND
1
0
54%
2
V2LHS_262926
ND
1
0
35%
2
V2LHS_230244
ND
1
0
50%
2
FLT1
V2LHS_287031
68%
2
75%
2
V2LHS_113897
155%
2
103%
2
V2LHS_113893
ND
1,2
0
39%
2
FLT3
V2LHS_173078
28%
4
ND
1,2
0
V2LHS_261831
34%
3
55%
4
V2LHS_173081
44%
2
92%
4
FOS
V2LHS_245907
ND
3
0
98%
6
V2LHS_42860
ND
3
0
61%
2
V2LHS_42928
ND
3
0
62%
2
FRAT1
V2LHS_68502
48%
2
70%
4
V2LHS_68573
63%
4
64%
3
V2LHS_68575
ND
3
0
97%
2
FYN
V2LHS_113997
11%
2
14%
2
V2LHS_113995
16%
2
29%
2
V2LHS_113996
45%
2
86%
2
FZD1
V2LHS_172585
27%
4
61%
4
V2LHS_172584
32%
4
62%
4
V2LHS_218523
36%
2
71%
4
H2AFZ
V2LHS_132985
2%
4
13%
2
V2LHS_132984
1%
3
27%
2
V2LHS_132986
26%
4
115%
4
HOXA10
V2LHS_244712
ND
1
0
ND
1
0
V2LHS_51880
ND
1
0
ND
1
0
V2LHS_192251
ND
1
0
ND
1
0
HOXA9
V2LHS_133130
53%
2
ND
3
0
V2LHS_133131
94%
2
ND
3
0
V2LHS_61850
147%
2
ND
3
0
ID4
V2LHS_271687
85%
3
27%
2
V2LHS_132246
97%
3
36%
2
V2LHS_235854
95%
3
42%
2
IGF1R
V2LHS_131069
ND
3
0
20%
2
V2LHS_131072
ND
3
0
45%
4
V2LHS_131070
ND
3
0
43%
2
ILK
V2LHS_202751
6%
2
81%
2
V2LHS_202919
6%
2
36%
2
V2LHS_202417
58%
2
113%
2
INSR
V2LHS_77246
35%
2
37%
4
V2LHS_77247
68%
3
89%
4
V2LHS_258435
107%
4
32%
2
ITK
V2LHS_63242
ND
1
0
ND
1
0
V2LHS_63243
ND
1
0
ND
1
0
V2LHS_63244
ND
1
0
ND
1
0
JAK1
V2LHS_133563
ND
3
0
10%
2
V2LHS_133562
ND
3
0
14%
2
V2LHS_133559
ND
3
0
18%
2
JAK2
V2LHS_61648
42%
2
57%
3
V2LHS_61649
33%
2
35%
2
V2LHS_61652
117%
4
120%
4
KIT
V2LHS_76973
ND
1
0
166%
2
V2LHS_76969
ND
1
0
ND
1,2
0
V2LHS_76974
ND
1
0
ND
1,2
0
LCK
V2LHS_37233
75%
2
ND
1
0
V2LHS_37234
76%
2
ND
1
0
V2LHS_37232
ND
1
0
ND
1
0
LYN
V2LHS_134145
ND
3
0
65%
4
V2LHS_134144
ND
3
0
13%
2
V2LHS_262582
ND
3
0
10%
2
MAPK1
V2LHS_202979
15%
4
17%
2
V2LHS_222351
32%
4
192%
4
V2LHS_217986
40%
3
47%
2
MAPK11
V2LHS_170506
17%
4
62%
4
V2LHS_170508
43%
2
94%
4
V2LHS_170505
60%
4
91%
4
MAPK8
V2LHS_217930
35%
4
69%
4
V2LHS_170502
40%
4
42%
2
V2LHS_223560
42%
4
57%
4
MAPK9
V2LHS_170515
ND
3
0
68%
2
V2LHS_262416
ND
3
0
24%
2
V2LHS_170514
ND
3
0
24%
2
MAPKAPK2
V2LHS_36045
23%
4
27%
4
V2LHS_202459
30%
4
52%
4
V2LHS_263378
117%
2
92%
2
MAX
V2LHS_24949
4%
2
13%
4
V2LHS_287035
9%
2
16%
4
V2LHS_24953
ND
1,2
0
43%
2
MDM2
V2LHS_254553
7%
4
46%
4
V2LHS_254556
20%
4
74%
6
V2LHS_151657
60%
4
105%
6
MET
V2LHS_76544
14%
3
16%
4
V2LHS_76542
18%
3
28%
4
V2LHS_76541
36%
4
71%
4
MLH1
V2LHS_76498
7%
2
27%
3
V2LHS_261056
13%
1
21%
2
V2LHS_76497
17%
2
30%
2
MMP11
V2LHS_215811
16%
2
16%
4
V2LHS_200010
27%
3
23%
4
V2LHS_12456
45%
3
20%
3
MSH2
V2LHS_76354
3%
1
21%
2
V2LHS_76350
4%
2
20%
2
V2LHS_76353
9%
2
31%
2
MTCP1
V2LHS_215575
106%
4
39%
2
V2LHS_211774
86%
4
66%
4
V2LHS_213953
89%
4
45%
3
NCOA3
V2LHS_207128
18%
4
37%
4
V2LHS_261936
21%
4
33%
4
V2LHS_200609
36%
4
38%
2
NR4A3
V2LHS_203384
19%
1
114%
4
V2LHS_203095
33%
2
88%
4
V2LHS_239115
52%
2
126%
3
NRAS
V2LHS_152359
100%
2
133%
6
V2LHS_152358
ND
3
0
40%
2
V2LHS_152356
ND
3
0
67%
2
PAK1
V2LHS_152618
ND
1,2
0
ND
1,2
0
V2LHS_152621
ND
1,2
0
ND
1,2
0
V2LHS_152622
ND
1,2
0
ND
1,2
0
PAK4
V2LHS_197812
9%
4
17%
4
PBX3
V2LHS_249334
30%
4
34%
2