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Home | RNAi | Validated GIPZ shRNAmir cancer | Data Table

KEY
ND¹	No data - 18S but not target gene detected likely indicating low gene expression.
ND²	No data - High Ct value for 18S indicating there was too little sample mRNA.
ND³	No data - Reaction failed for other reasons.
1	1 tissue culture replicates
2	2 tissue culture replicates
3/4	3 or 4 tissue culture replicates

Data Table

Gene list with corresponding clone ID# and percent remaining gene expression.

Gene	Oligo ID	OVCAR-8		MCF-7
Gene	Oligo ID	%	Replicates	%	Replicates
ABL1	V2LHS_198745	14%	2	65%	2
	V2LHS_196508	40%	2	126%	2
	V2LHS_196809	115%	2	88%	1
ABL2	V2LHS_201802	10%	2	113%	1
	V2LHS_49239	21%	1	34%	2
	V2LHS_203486	24%	2	104%	2
AKT1	V2LHS_287019	15%	4	49%	2
	V2LHS_188525	21%	4	67%	4
	V2LHS_192049	45%	2	147%	4
AKT3	V2LHS_68871	11%	4	ND^1,2	0
	V2LHS_68869	19%	4	147%	2
	V2LHS_68872	102%	4	114%	2
ANXA8	V2LHS_132531	9%	2	16%	2
	V2LHS_132529	18%	2	48%	1
	V2LHS_287020	38%	2	27%	2
APAF1	V2LHS_94539	10%	2	50%	2
	V2LHS_94542	23%	2	134%	3
	V2LHS_94543	45%	2	113%	2
ATM	V2LHS_192880	20%	2	74%	1
	V2LHS_89368	42%	2	100%	2
	V2LHS_89366	47%	2	ND^1,2	0
ATR	V2LHS_94659	24%	4	86%	4
	V2LHS_94661	29%	2	44%	2
	V2LHS_287021	116%	4	87%	6
AXL	V2LHS_202535	14%	2	ND^2,3	0
	V2LHS_132889	77%	2	ND^2,3	0
	V2LHS_201787	91%	2	ND^2,3	0
BCL2	V2LHS_111810	31%	2	38%	2
	V2LHS_111806	40%	2	89%	3
	V2LHS_111811	79%	1	113%	2
BCL2L1	V2LHS_202373	27%	2	54%	1
	V2LHS_287022	31%	2	71%	1
	V2LHS_269487	33%	2	62%	2
BCL3	V2LHS_48622	26%	4	50%	2
	V2LHS_48623	29%	4	66%	4
	V2LHS_48625	69%	4	89%	4
BCL9	V2LHS_287023	21%	4	41%	2
	V2LHS_15242	37%	4	82%	4
	V2LHS_287024	40%	2	111%	4
BLK	V2LHS_150029	ND¹	0	ND¹	0
	V2LHS_262371	ND¹	0	ND¹	0
	V2LHS_150031	ND¹	0	ND¹	0
BRCA1	V2LHS_90880	26%	2	47%	2
	V2LHS_90876	36%	2	71%	2
	V2LHS_90877	39%	2	69%	2
BUB1	V2LHS_15109	9%	2	58%	2
	V2LHS_15112	11%	2	34%	2
	V2LHS_15111	26%	2	79%	2
BUB1B	V2LHS_112634	45%	2	12%	2
	V2LHS_112635	75%	4	15%	4
	V2LHS_112633	78%	4	101%	4
CAPZB	V2LHS_62217	6%	2	21%	2
	V2LHS_280836	10%	2	28%	2
	V2LHS_287028	20%	2	81%	2
CCNA2	V2LHS_112771	22%	2	86%	2
	V2LHS_112774	23%	2	43%	2
	V2LHS_112775	26%	1	133%	1
CCNE1	V2LHS_112781	20%	4	38%	4
	V2LHS_112782	37%	4	78%	4
	V2LHS_112780	41%	4	45%	2
CCNE2	V2LHS_202834	17%	1	39%	2
	V2LHS_202479	20%	1	34%	2
	V2LHS_203157	62%	1	45%	2
CDC2	V2LHS_150417	21%	2	41%	2
	V2LHS_150421	28%	2	59%	2
	V2LHS_150418	40%	2	46%	2
CDH1	V2LHS_14837	33%	2	82%	2
	V2LHS_243170	52%	2	31%	2
	V2LHS_14838	71%	2	17%	2
CDK2	V2LHS_150476	12%	2	18%	2
	V2LHS_150479	21%	2	11%	2
	V2LHS_150477	24%	2	54%	2
CDKN1A	V2LHS_202469	31%	2	61%	2
	V2LHS_203118	38%	2	64%	2
	V2LHS_268120	44%	2	70%	2
CDKN1C	V2LHS_88832	10%	1	70%	2
	V2LHS_257806	17%	1	26%	2
	V2LHS_88831	ND¹	0	39%	2
CDKN2A	V2LHS_200168	51%	2	ND¹	0
	V2LHS_200698	81%	2	ND¹	0
	V2LHS_195839	125%	2	ND¹	0
CDKN2B	V2LHS_262142	18%	2	26%	2
	V2LHS_202466	23%	2	31%	2
	V2LHS_201553	81%	2	83%	2
CDKN2C	V2LHS_262296	10%	4	18%	2
	V2LHS_262058	37%	2	78%	2
	V2LHS_202787	75%	4	124%	2
COL4A6	V2LHS_150724	31%	4	102%	4
	V2LHS_150727	37%	2	30%	2
	V2LHS_150723	127%	4	202%	4
CSK	V2LHS_287029	15%	2	40%	2
	V2LHS_24205	18%	2	38%	2
	V2LHS_24207	19%	2	26%	2
CSNK1E	V2LHS_150981	16%	4	38%	4
	V2LHS_150981	38%	4	62%	4
	V2LHS_192204	83%	4	105%	4
CTGF	V2LHS_151005	46%	4	101%	6
	V2LHS_151004	80%	4	118%	6
	V2LHS_151007	72%	4	156%	6
CTNNB1	V2LHS_151023	8%	2	16%	2
	V2LHS_151022	31%	2	58%	2
	V2LHS_151027	77%	2	69%	2
CXCR4	V2LHS_172392	33%	4	332%	3
	V2LHS_172391	23%	2	68%	3
	V2LHS_172388	84%	4	75%	3
DAPK1	V2LHS_62089	12%	4	22%	2
	V2LHS_62084	24%	4	32%	2
	V2LHS_62085	42%	4	125%	2
DDR1	V2LHS_202770	10%	4	28%	4
	V2LHS_262746	18%	4	21%	4
	V2LHS_263364	42%	2	65%	4
DDR2	V2LHS_63697	15%	4	25%	4
	V2LHS_63700	15%	4	22%	4
	V2LHS_63695	41%	4	20%	2
DEK	V2LHS_172419	4%	2	8%	2
	V2LHS_172420	14%	2	7%	2
	V2LHS_172423	102%	2	72%	2
DNMT3B	V2LHS_77234	48%	2	70%	4
	V2LHS_77230	71%	4	67%	4
	V2LHS_77233	48%	2	67%	4
DYRK2	V2LHS_32605	34%	1	63%	2
	V2LHS_32603	36%	1	91%	4
	V2LHS_32604	38%	1	96%	3
E2F1	V2LHS_43497	20%	2	14%	2
	V2LHS_43498	30%	4	39%	3
	V2LHS_287030	63%	2	59%	2
EDG2	V2LHS_239027	21%	2	ND¹	0
	V2LHS_239021	26%	2	ND¹	0
	V2LHS_201631	72%	2	ND¹	0
EED	V2LHS_23171	48%	2	48%	2
	V2LHS_23172	82%	3	93%	4
	V2LHS_23174	123%	4	93%	4
EPHA2	V2LHS_17961	14%	2	7%	3
EPHA2	V2LHS_17959	31%	4	77%	3
EPHA4	V2LHS_17861	52%	1	132%	3
	V2LHS_17864	ND¹	0	118%	2
	V2LHS_101745	ND¹	0	76%	2
EPHB3	V2LHS_17765	75%	4	85%	4
	V2LHS_17766	75%	3	65%	2
	V2LHS_17694	80%	2	98%	2
EPHB4	V2LHS_17706	17%	2	84%	2
	V2LHS_17702	84%	4	80%	2
	V2LHS_17701	100%	2	99%	2
ERBB2	V2LHS_17669	97%	4	73%	4
	V2LHS_17671	108%	4	21%	2
	V2LHS_17672	124%	4	40%	2
ERBB4	V2LHS_43330	ND^1,2	0	83%	2
	V2LHS_43326	ND^1,2	0	43%	2
	V2LHS_43327	ND^1,2	0	348%	2
ETS1	V2LHS_244839	38%	2	ND¹	0
	V2LHS_262605	94%	2	ND¹	0
	V2LHS_43294	110%	2	ND¹	0
EZH2	V2LHS_17508	ND¹	0	52%	2
	V2LHS_63066	ND¹	0	27%	2
	V2LHS_238994	ND¹	0	32%	2
FADD	V2LHS_16972	11%	1	61%	2
	V2LHS_16975	14%	1	21%	2
	V2LHS_16973	ND¹	0	45%	2
FER	V2LHS_43109	9%	3	28%	4
	V2LHS_43108	24%	4	38%	2
	V2LHS_43110	12%	2	38%	2
FES	V2LHS_113826	19%	2	26%	3
	V2LHS_113824	27%	4	47%	2
	V2LHS_113821	35%	3	28%	4
FGFR1	V2LHS_194182	91%	2	84%	2
	V2LHS_193464	108%	2	98%	2
	V2LHS_191146	110%	2	99%	2
FGFR2	V2LHS_201766	ND¹	0	54%	2
	V2LHS_262926	ND¹	0	35%	2
	V2LHS_230244	ND¹	0	50%	2
FLT1	V2LHS_287031	68%	2	75%	2
	V2LHS_113897	155%	2	103%	2
	V2LHS_113893	ND^1,2	0	39%	2
FLT3	V2LHS_173078	28%	4	ND^1,2	0
	V2LHS_261831	34%	3	55%	4
	V2LHS_173081	44%	2	92%	4
FOS	V2LHS_245907	ND³	0	98%	6
	V2LHS_42860	ND³	0	61%	2
	V2LHS_42928	ND³	0	62%	2
FRAT1	V2LHS_68502	48%	2	70%	4
	V2LHS_68573	63%	4	64%	3
	V2LHS_68575	ND³	0	97%	2
FYN	V2LHS_113997	11%	2	14%	2
	V2LHS_113995	16%	2	29%	2
	V2LHS_113996	45%	2	86%	2
FZD1	V2LHS_172585	27%	4	61%	4
	V2LHS_172584	32%	4	62%	4
	V2LHS_218523	36%	2	71%	4
H2AFZ	V2LHS_132985	2%	4	13%	2
	V2LHS_132984	1%	3	27%	2
	V2LHS_132986	26%	4	115%	4
HOXA10	V2LHS_244712	ND¹	0	ND¹	0
	V2LHS_51880	ND¹	0	ND¹	0
	V2LHS_192251	ND¹	0	ND¹	0
HOXA9	V2LHS_133130	53%	2	ND³	0
	V2LHS_133131	94%	2	ND³	0
	V2LHS_61850	147%	2	ND³	0
ID4	V2LHS_271687	85%	3	27%	2
	V2LHS_132246	97%	3	36%	2
	V2LHS_235854	95%	3	42%	2
IGF1R	V2LHS_131069	ND³	0	20%	2
	V2LHS_131072	ND³	0	45%	4
	V2LHS_131070	ND³	0	43%	2
ILK	V2LHS_202751	6%	2	81%	2
	V2LHS_202919	6%	2	36%	2
	V2LHS_202417	58%	2	113%	2
INSR	V2LHS_77246	35%	2	37%	4
	V2LHS_77247	68%	3	89%	4
	V2LHS_258435	107%	4	32%	2
ITK	V2LHS_63242	ND¹	0	ND¹	0
	V2LHS_63243	ND¹	0	ND¹	0
	V2LHS_63244	ND¹	0	ND¹	0
JAK1	V2LHS_133563	ND³	0	10%	2
	V2LHS_133562	ND³	0	14%	2
	V2LHS_133559	ND³	0	18%	2
JAK2	V2LHS_61648	42%	2	57%	3
	V2LHS_61649	33%	2	35%	2
	V2LHS_61652	117%	4	120%	4
KIT	V2LHS_76973	ND¹	0	166%	2
	V2LHS_76969	ND¹	0	ND^1,2	0
	V2LHS_76974	ND¹	0	ND^1,2	0
LCK	V2LHS_37233	75%	2	ND¹	0
	V2LHS_37234	76%	2	ND¹	0
	V2LHS_37232	ND¹	0	ND¹	0
LYN	V2LHS_134145	ND³	0	65%	4
	V2LHS_134144	ND³	0	13%	2
	V2LHS_262582	ND³	0	10%	2
MAPK1	V2LHS_202979	15%	4	17%	2
	V2LHS_222351	32%	4	192%	4
	V2LHS_217986	40%	3	47%	2
MAPK11	V2LHS_170506	17%	4	62%	4
	V2LHS_170508	43%	2	94%	4
	V2LHS_170505	60%	4	91%	4
MAPK8	V2LHS_217930	35%	4	69%	4
	V2LHS_170502	40%	4	42%	2
	V2LHS_223560	42%	4	57%	4
MAPK9	V2LHS_170515	ND³	0	68%	2
	V2LHS_262416	ND³	0	24%	2
	V2LHS_170514	ND³	0	24%	2
MAPKAPK2	V2LHS_36045	23%	4	27%	4
	V2LHS_202459	30%	4	52%	4
	V2LHS_263378	117%	2	92%	2
MAX	V2LHS_24949	4%	2	13%	4
	V2LHS_287035	9%	2	16%	4
	V2LHS_24953	ND^1,2	0	43%	2
MDM2	V2LHS_254553	7%	4	46%	4
	V2LHS_254556	20%	4	74%	6
	V2LHS_151657	60%	4	105%	6
MET	V2LHS_76544	14%	3	16%	4
	V2LHS_76542	18%	3	28%	4
	V2LHS_76541	36%	4	71%	4
MLH1	V2LHS_76498	7%	2	27%	3
	V2LHS_261056	13%	1	21%	2
	V2LHS_76497	17%	2	30%	2
MMP11	V2LHS_215811	16%	2	16%	4
	V2LHS_200010	27%	3	23%	4
	V2LHS_12456	45%	3	20%	3
MSH2	V2LHS_76354	3%	1	21%	2
	V2LHS_76350	4%	2	20%	2
	V2LHS_76353	9%	2	31%	2
MTCP1	V2LHS_215575	106%	4	39%	2
	V2LHS_211774	86%	4	66%	4
	V2LHS_213953	89%	4	45%	3
NCOA3	V2LHS_207128	18%	4	37%	4
	V2LHS_261936	21%	4	33%	4
	V2LHS_200609	36%	4	38%	2
NR4A3	V2LHS_203384	19%	1	114%	4
	V2LHS_203095	33%	2	88%	4
	V2LHS_239115	52%	2	126%	3
NRAS	V2LHS_152359	100%	2	133%	6
	V2LHS_152358	ND³	0	40%	2
	V2LHS_152356	ND³	0	67%	2
PAK1	V2LHS_152618	ND^1,2	0	ND^1,2	0
	V2LHS_152621	ND^1,2	0	ND^1,2	0
	V2LHS_152622	ND^1,2	0	ND^1,2	0
PAK4	V2LHS_197812	9%	4	17%	4
PBX3	V2LHS_249334	30%	4	34%	2
	V2LHS_248142	37%	4	35%	2
	V2LHS_63403	37%	4	44%	2
PCNA	V2LHS_152710	10%	1	52%	2
	V2LHS_152712	44%	2	92%	2
	V2LHS_261970	109%	2	77%	2
PCTK3	V2LHS_130503	14%	2	50%	3
	V2LHS_130498	20%	1	34%	2
	V2LHS_130499	34%	1	116%	4
PDK1	V2LHS_223262	16%	2	43%	1
	V2LHS_262288	21%	2	48%	1
	V2LHS_169809	28%	2	97%	1
PIK3CA	V2LHS_58549	10%	2	99%	2
	V2LHS_58550	14%	4	44%	2
	V2LHS_58584	94%	2	139%	2
PMS2	V2LHS_232932	15%	4	37%	4
	V2LHS_93549	25%	4	90%	5
	V2LHS_93544	81%	4	155%	4
PRDM2	V2LHS_20207	33%	4	44%	2
	V2LHS_241827	44%	4	81%	4
	V2LHS_287036	53%	4	109%	4
PRKACB	V2LHS_170403	13%	2	ND³	0
	V2LHS_220512	21%	2	125%	1
	V2LHS_222043	33%	2	92%	2
PRKAR2B	V2LHS_170430	4%	2	ND³	0
	V2LHS_221377	9%	2	68%	2
	V2LHS_170431	10%	2	113%	2
PTEN	V2LHS_92317	7%	2	ND³	0
	V2LHS_231772	8%	2	72%	2
	V2LHS_92319	12%	2	66%	2
PTK2	V2LHS_57326	7%	2	60%	2
	V2LHS_57330	14%	3	97%	3
	V2LHS_248542	15%	2	34%	2
PTK2B	V2LHS_172999	25%	4	35%	2
	V2LHS_2156	29%	4	14%	2
	V2LHS_173002	42%	2	100%	4
PTTG1	V2LHS_242543	9%	2	68%	2
	V2LHS_28556	16%	3	69%	3
	V2LHS_28552	74%	2	89%	2
RAC1	V2LHS_94788	28%	2	37%	2
	V2LHS_261830	29%	2	66%	2
	V2LHS_203203	40%	2	76%	2
RAF1	V2LHS_171214	13%	4	38%	3
	V2LHS_171213	9%	4	28%	2
	V2LHS_171212	10%	3	69%	3
RB1	V2LHS_130611	21%	2	122%	4
	V2LHS_130606	18%	2	116%	2
	V2LHS_130607	48%	3	156%	3
RBL1	V2LHS_35223	267%	1	ND^1,2	0
	V2LHS_171291	ND^1,2	0	ND^1,2	0
	V2LHS_35220	64%	1	ND^1,2	0
RBL2	V2LHS_57099	43%	4	54%	4
	V2LHS_57102	39%	2	78%	4
	V2LHS_57100	45%	2	66%	4
RRM1	V2LHS_93885	80%	4	23%	2
	V2LHS_93881	89%	4	65%	4
	V2LHS_93884	98%	4	36%	2
RRM2	V2LHS_231025	41%	4	20%	2
	V2LHS_93887	50%	3	55%	3
	V2LHS_93889	93%	4	83%	4
SCRIB	V2LHS_162	17%	2	29%	4
	V2LHS_256522	47%	2	65%	1
	V2LHS_74302	59%	4	87%	3
SOCS1	V2LHS_23984	32%	4	77%	4
	V2LHS_23987	43%	4	102%	4
	V2LHS_287037	71%	2	115%	2
STK3	V2LHS_56745	140%	1	ND^1,2	0
	V2LHS_56747	150%	1	ND^1,2	0
	V2LHS_56748	ND^1,2	0	ND^1,2	0
STK6	V2LHS_153607	7%	4	41%	4
	V2LHS_203027	11%	2	46%	4
	V2LHS_12364	38%	2	82%	6
SYK	V2LHS_153702	ND¹	0	68%	4
	V2LHS_153703	ND¹	0	51%	3
	V2LHS_153701	ND¹	0	118%	3
TACC1	V2LHS_56716	101%	4	119%	4
	V2LHS_56714	25%	4	45%	2
	V2LHS_56713	22%	4	35%	2
TEC	V2LHS_153876	38%	4	47%	2
	V2LHS_153878	41%	2	77%	4
	V2LHS_153874	72%	4	39%	2
TEK	V2LHS_93160	ND¹	0	ND¹	0
	V2LHS_232742	ND¹	0	ND¹	0
	V2LHS_232742	ND¹	0	ND¹	0
TFAP2C	V2LHS_153917	22%	2	96%	2
	V2LHS_153918	24%	1	73%	2
	V2LHS_153920	ND¹	0	79%	2
TFE3	V2LHS_197759	9%	4	42%	2
	V2LHS_204977	37%	4	117%	4
	V2LHS_287038	39%	2	84%	4
TGFB2	V2LHS_153975	16%	4	28%	4
	V2LHS_153972	21%	4	86%	4
	V2LHS_153971	37%	2	111%	4
TNFRSF12A	V2LHS_135377	15%	4	21%	4
	V2LHS_135381	19%	2	32%	2
	V2LHS_135378	63%	3	88%	4
TP53	V2LHS_93615	7%	4	29%	4
	V2LHS_93613	18%	4	57%	4
	V2LHS_287039	25%	4	74%	4
TXK	V2LHS_171688	ND¹	0	ND¹	0
	V2LHS_171691	ND¹	0	ND¹	0
	V2LHS_171689	ND¹	0	ND¹	0
TYRO3	V2LHS_56438	12%	4	31%	2
	V2LHS_56442	13%	4	46%	4
	V2LHS_56439	37%	4	63%	4
VAV1	V2LHS_69844	7%	2	211%	1
	V2LHS_69842	10%	2	ND^1,2	0
	V2LHS_69841	11%	2	ND^1,2	0
WNT10B	V2LHS_172033	12%	4	8%	2
	V2LHS_218395	31%	4	46%	2
	V2LHS_287040	64%	4	118%	4
WNT5A	V2LHS_172021	23%	2	69%	2
	V2LHS_172018	33%	2	88%	2
	V2LHS_172016	ND¹	0	101%	1
ZNF217	V2LHS_12516	21%	4	76%	4
	V2LHS_199670	37%	4	97%	4
	V2LHS_196547	40%	2	99%	4

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