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Positive selection screening with Decode RNAi viral pools

Purchasing Information
Cat # Description Literature ACA COM Buy
RHS4847
Decode RNAi viral screening pools-Hs GIPZ lentiviral shRNAmir library   $10000 call
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(only clones from RHS4847)
RHS4348 Non-silencing-GIPZ lentiviral shRNAmir control- Viral particles   $300 $300
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(only clones from RHS4348)
PRM5038
Decode RNAi primer kit-200 reactions   $150 $150
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(only clones from PRM5038)
PRM5040 Decode RNAi primer kit-600 reactions   $250 $250
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(only clones from PRM5040)
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Decode RNAi viral screening pools
for multiplexed RNAi screens

Decode™ RNAi viral screening pools combine the advantages of shRNAmir design, the power of viral delivery and the convenience of ready-to-use pooled viral particles to facilitate multiplexed RNAi screening. The high titer viral pool format enables genome-scale RNAi screening without the cost and labor associated with individually arrayed screens. Perform genome-scale RNAi screens for genes regulating cellular responses, signaling pathways or discover genes with novel functions - all at the convenience of your benchtop.

The genome-wide human GIPZ lentiviral shRNAmir library is now available in Decode RNAi viral screening pool format and has the following advantages:

  • GIPZ Lentiviral shRNAmir produces efficient single copy knockdown
  • High titer viral pool format facilitates multiplexed RNAi screens
  • Lentiviral delivery extends RNAi screening to primary and non-dividing cells 
  • Primers for identification of hits are included

Decode RNAi viral screening pools are available in a kit optimized for positive selection screening which includes:

  • Seven viral pools each containing 10K GIPZ lentiviral shRNAmir
  • Non-silencing control shRNAmir construct-Lentiviral particles
  • PCR primers for shRNAmir amplification
  • Positive control plasmid DNA for PCR amplification
  • Sequencing primer to identify shRNAmir

Technical details

Effective single copy knockdown with GIPZ lentiviral shRNAmir

Positive selection screening using Decode RNAi viral pools

Pool Specifications
Each screening pool contains ~10,000 shRNAmir as viral particles. Viral titers of each pool are greater than 5x10^8TU/ml. Depending on the target cell line used one Decode RNAi viral screening kit contains enough virus to perform at least two screens in triplicate.

This product is covered by the following limited use licenses:
Limited Use License-shRNA technologies
Limited Use License-ddRNAi
Limited Use License-TurboGFP
Shipping Information:
Decode RNAi viral screening pools are provided as frozen viral particles containing at least 5x10^8 transducing units per ml in DMEM (Dulbecco's Modified Eagle's Medium) with no serum or antibiotics and are ready to use in RNAi experiments. Pooled virus is shipped on dry-ice and should be stored in a -80ºC freezer upon arrival. Decode RNAi screening pools will remain stable for at least one year without any appreciable loss of titer. The vials shipped in the kit have not been thawed, and therefore the indicated titers are accurate for the first thaw. The certificate of analysis contains lot-specific titer and production dates for controls.
References:
  1. Paddison, P et al (2004) "Cloning of short hairpin RNAs for gene knockdown in mammalian cells" Nature Methods Vol1:2, 163-167
  2. Silva J et al (2005) "Second-generation shRNA libraries covering the mouse and human genomes" Nature Genetics Vol 37:11, 1281-88
  3. Stegmeier F et al (2005) "A lentiviral microRNA-based system for single-copy polymerase II-regulated RNA interference in mammalian cells" PNAS Vol 102:37; 13212-13217
  4. Shimada, Takashi, et. al, Development of Vectors Utilized for Gene Therapy for AIDS, AIDS 4, 1995
  5. Gazin C et al 2007 "An elaborate pathway required for Ras-mediated epigenetic silencing" Nature Vol 449: 1073-1077.
  6. Silva JM et al 2008 " Profiling Essential Genes in Human Mammary Cells by Multiplex RNAi Screening" Science Vol 319, 617-620
  7. Schlabach M et al 2008 "Cancer Proliferation Gene Discovery Through Functional Genomics" Science Vol 319, 620-624.
  8. Westbrook T et al 2005 "A Genetic Screen for Candidate Tumor Suppressors Identifies REST" Cell, Vol. 121, 837–848.

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